Dicots PLAZA 4.5 gene overview : Cc01_g00550

Gene: Cc01_g00550 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00550
Transcript Identifier: Cc01_g00550.1
Gene Type: Coding gene
Location: chr1 : 785574-788738 : positive

Family Information

Homologous gene family: HOM04D000010
(5389 genes in 51 species)
specific family
Orthologous gene family: ORTHO04D000230
(643 genes in 27 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Putative Disease resistance protein RGA2

Identifiers

Type	Value
tid	GSCOCT00011035001
id	GSCOCG00011035001
pid	GSCOCP00011035001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043531	IEA	InterPro	ADP binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR002182	NB-ARC
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated