Dicots PLAZA 4.5 gene overview : Cc01_g00540

Gene: Cc01_g00540 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00540
Transcript Identifier: Cc01_g00540.1
Gene Type: Coding gene
Location: chr1 : 774012-774615 : negative

Family Information

Homologous gene family: HOM04D000141
(1353 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D012111
(14 genes in 2 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Probable caffeine synthase 4

Identifiers

Type	Value
tid	GSCOCT00011033001
id	GSCOCG00011033001
pid	GSCOCP00011033001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008168	IEA	InterPro	methyltransferase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR005299	SAM dependent carboxyl methyltransferase
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Mapman id	Description
50.2.1	.Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group