Dicots PLAZA 4.5 gene overview : Cc01_g00360

Gene: Cc01_g00360 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00360
Transcript Identifier: Cc01_g00360.1
Gene Type: Coding gene
Location: chr1 : 349809-351482 : positive

Family Information

Homologous gene family: HOM04D000201
(998 genes in 52 species)
specific family
Orthologous gene family: ORTHO04D000265
(603 genes in 52 species)
specific family

Descriptions

Description: L-ascorbate oxidase homolog

Identifiers

Type	Value
tid	GSCOCT00012396001
id	GSCOCG00012396001
pid	GSCOCP00012396001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005507	IEA	InterPro	copper ion binding
GO:0016491	IEA	InterPro	oxidoreductase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034271	Ascorbate oxidase homologue, second cupredoxin domain
IPR008972	Cupredoxin
IPR011707	Multicopper oxidase, type 3
IPR011706	Multicopper oxidase, type 2
IPR001117	Multicopper oxidase, type 1

Mapman id	Description
50.1.10	.Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor