Dicots PLAZA 4.5 gene overview : Cc01_g00280

Gene: Cc01_g00280 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00280
Transcript Identifier: Cc01_g00280.1
Gene Type: Coding gene
Location: chr1 : 269389-270543 : positive

Family Information

Homologous gene family: HOM04D000076
(2002 genes in 55 species)
specific family

Descriptions

Description: Putative E3 ubiquitin-protein ligase RNF115

Identifiers

Type	Value
tid	GSCOCT00012406001
id	GSCOCG00012406001
pid	GSCOCP00012406001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT4G26400

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
35.1	not assigned.annotated