Dicots PLAZA 4.5 gene overview : Cc01_g00250

Gene: Cc01_g00250 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00250
Transcript Identifier: Cc01_g00250.1
Gene Type: Coding gene
Location: chr1 : 228213-232372 : negative

Family Information

Homologous gene family: HOM04D001054
(276 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002967
(125 genes in 48 species)
specific family

Descriptions

Description: TATA-box-binding protein

Identifiers

Type	Value
tid	GSCOCT00012409001
id	GSCOCG00012409001
pid	GSCOCP00012409001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006352	IEA	InterPro	DNA-templated transcription, initiation
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT1G55520
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT1G55520
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT3G13445
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G55520
GO:0009553	IEA	PLAZA Integrative Orthology	embryo sac development	AT3G13445
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT1G55520
GO:0010255	IEA	PLAZA Integrative Orthology	glucose mediated signaling pathway	AT3G13445
GO:0010498	IEA	PLAZA Integrative Orthology	proteasomal protein catabolic process	AT3G13445
GO:0000723	IEA	PLAZA Integrative Orthology	telomere maintenance	AT3G13445
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT1G55520
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT1G55520
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT1G55520
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT1G55520
GO:0055114	IEA	PLAZA Homology (enrichment)	oxidation-reduction process	HOM04D001054

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding
GO:0008301	IEA	PLAZA Integrative Orthology	DNA binding, bending	AT1G55520
GO:0003691	IEA	PLAZA Integrative Orthology	double-stranded telomeric DNA binding	AT1G55520
GO:0043047	IEA	PLAZA Integrative Orthology	single-stranded telomeric DNA binding	AT1G55520
GO:0042162	IEA	PLAZA Integrative Orthology	telomeric DNA binding	AT1G55520
GO:0016491	IEA	PLAZA Homology (enrichment)	oxidoreductase activity	HOM04D001054
GO:0042803	IEA	PLAZA Integrative Orthology	protein homodimerization activity	AT1G55520
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT1G55520

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT1G55520
GO:0000781	IEA	PLAZA Integrative Orthology	chromosome, telomeric region	AT3G13445
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G13445
GO:0000502	IEA	PLAZA Integrative Orthology	proteasome complex	AT3G13445
GO:0000785	IEA	PLAZA Integrative Orthology	chromatin	AT1G55520
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT3G13445
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G55520
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT3G13445
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT3G13445

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR033710	TATA-box binding protein, eukaryotic
IPR000814	TATA-box binding protein
IPR030491	TATA-box binding protein, conserved site

Mapman id	Description
15.3.5.3.1	.RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIId basal transcription regulation complex.TATA-box-binding component
15.4.1	.RNA biosynthesis.RNA polymerase III-dependent transcription.TATA-box-binding protein (TBP)