Dicots PLAZA 4.5 gene overview : Cc01_g00230

Gene: Cc01_g00230 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00230
Transcript Identifier: Cc01_g00230.1
Gene Type: Coding gene
Location: chr1 : 215279-220399 : positive

Family Information

Homologous gene family: HOM04D000016
(3952 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D010334
(36 genes in 33 species)
specific family

Descriptions

Description: Putative Subtilisin-like protease

Identifiers

Type	Value
tid	GSCOCT00012411001
id	GSCOCG00012411001
pid	GSCOCP00012411001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006508	IEA	InterPro	proteolysis
GO:0009567	IEA	PLAZA Integrative Orthology	double fertilization forming a zygote and endosperm	AT4G26330

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004252	IEA	InterPro	serine-type endopeptidase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005777	IEA	PLAZA Integrative Orthology	peroxisome	AT4G26330
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT4G26330

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034197	Cucumisin-like catalytic domain
IPR000209	Peptidase S8/S53 domain
IPR010259	Peptidase S8 propeptide/proteinase inhibitor I9
IPR015500	Peptidase S8, subtilisin-related
IPR023828	Peptidase S8, subtilisin, Ser-active site
IPR022398	Peptidase S8, subtilisin, His-active site

Mapman id	Description
19.4.2.1.3	.Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT3)