Dicots PLAZA 4.5 gene overview : Cc01_g00210

Gene: Cc01_g00210 (Coffea canephora)

Overview

Gene Identifier: Cc01_g00210
Transcript Identifier: Cc01_g00210.1
Gene Type: Coding gene
Location: chr1 : 201413-202782 : positive

Family Information

Homologous gene family: HOM04D000177
(1116 genes in 55 species)
specific family

Descriptions

Description: ATP-dependent zinc metalloprotease FTSH, chloroplastic (Fragment)

Identifiers

Type	Value
tid	GSCOCT00012413001
id	GSCOCG00012413001
pid	GSCOCP00012413001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006508	IEA	PLAZA Homology (enrichment)	proteolysis	HOM04D000177

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005524	IEA	PLAZA Homology (enrichment)	ATP binding	HOM04D000177
GO:0004222	IEA	PLAZA Homology (enrichment)	metalloendopeptidase activity	HOM04D000177

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.1	not assigned.annotated