Dicots PLAZA 4.5 gene overview : Cc00_g17670

Gene: Cc00_g17670 (Coffea canephora)

Overview

Gene Identifier: Cc00_g17670
Transcript Identifier: Cc00_g17670.1
Gene Type: Coding gene
Location: chr0 : 117135047-117138153 : negative

Family Information

Homologous gene family: HOM04D000242
(871 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000255
(614 genes in 54 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Probable aldo-keto reductase 2

Identifiers

Type	Value
tid	GSCOCT00007029001
id	GSCOCG00007029001
pid	GSCOCP00007029001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

No GO associations found for this gene.

InterPro	Description
IPR023210	NADP-dependent oxidoreductase domain

Mapman id	Description
35.1	not assigned.annotated