Dicots PLAZA 4.5 gene overview : Cc00_g00200

Gene: Cc00_g00200 (Coffea canephora)

Overview

Gene Identifier: Cc00_g00200
Transcript Identifier: Cc00_g00200.1
Gene Type: Coding gene
Location: chr0 : 345862-347326 : positive

Family Information

Homologous gene family: HOM04D000297
(742 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000215
(656 genes in 55 species)
specific family

Descriptions

Description: Acetate/butyrate--CoA ligase AAE7, peroxisomal

Identifiers

Type	Value
tid	GSCOCT00036097001
id	GSCOCG00036097001
pid	GSCOCP00036097001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008152	IEA	InterPro	metabolic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003824	IEA	InterPro	catalytic activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR025110	AMP-binding enzyme, C-terminal domain
IPR000873	AMP-dependent synthetase/ligase

Mapman id	Description
35.1	not assigned.annotated