Dicots PLAZA 4.5 gene overview : Cc00_g00190

Gene: Cc00_g00190 (Coffea canephora)

Overview

Gene Identifier: Cc00_g00190
Transcript Identifier: Cc00_g00190.1
Gene Type: Coding gene
Location: chr0 : 337793-341816 : positive

Family Information

Homologous gene family: HOM04D003214
(102 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D004176
(95 genes in 55 species)
specific family

Descriptions

Description: Proteasome subunit beta type-6

Identifiers

Type	Value
tid	GSCOCT00036095001
id	GSCOCG00036095001
pid	GSCOCP00036095001

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0051603	IEA	InterPro	proteolysis involved in cellular protein catabolic process
GO:0010363	IEA	PLAZA Integrative Orthology	regulation of plant-type hypersensitive response	AT4G31300
GO:0010043	IEA	PLAZA Integrative Orthology	response to zinc ion	AT4G31300
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT4G31300
GO:0006511	IEA	PLAZA Integrative Orthology	ubiquitin-dependent protein catabolic process	AT4G31300

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004298	IEA	InterPro	threonine-type endopeptidase activity
GO:0004175	IEA	InterPro	endopeptidase activity
GO:0008233	IEA	PLAZA Integrative Orthology	peptidase activity	AT4G31300

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005839	IEA	InterPro	proteasome core complex
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT4G31300
GO:0000502	IEA	PLAZA Integrative Orthology	proteasome complex	AT4G31300
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT4G31300
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT4G31300

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR029055	Nucleophile aminohydrolases, N-terminal
IPR001353	Proteasome, subunit alpha/beta
IPR000243	Peptidase T1A, proteasome beta-subunit
IPR016050	Proteasome beta-type subunit, conserved site
IPR023333	Proteasome B-type subunit

Mapman id	Description
19.2.6.1.2.1	.Protein homeostasis.ubiquitin-proteasome system.26S proteasome.20S core particle.beta-type components.component beta type-1