Dicots PLAZA 4.5 gene overview : Cc00_g00180

Gene: Cc00_g00180 (Coffea canephora)

Overview

Gene Identifier: Cc00_g00180
Transcript Identifier: Cc00_g00180.1
Gene Type: Coding gene
Location: chr0 : 316972-331812 : negative

Family Information

Homologous gene family: HOM04D000852
(326 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D005561
(79 genes in 54 species)
specific family

Descriptions

Description: Superkiller viralicidic activity 2-like 2

Identifiers

Type	Value
tid	GSCOCT00036094001
id	GSCOCG00036094001
pid	GSCOCP00036094001

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006401	IEA	InterPro	RNA catabolic process
GO:0016070	IEA	PLAZA Integrative Orthology	RNA metabolic process	AT2G06990
GO:0010093	IEA	PLAZA Integrative Orthology	specification of floral organ identity	AT2G06990
GO:0006397	IEA	PLAZA Integrative Orthology	mRNA processing	AT2G06990
GO:0060149	IEA	PLAZA Integrative Orthology	negative regulation of posttranscriptional gene silencing	AT2G06990

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0003723	IEA	InterPro	RNA binding
GO:0003724	IEA	InterPro	RNA helicase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016607	IEA	PLAZA Integrative Orthology	nuclear speck	AT2G06990
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT2G06990
GO:0005654	IEA	PLAZA Integrative Orthology	nucleoplasm	AT2G06990

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR025696	rRNA-processing arch domain
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain
IPR016438	ATP-dependent RNA helicase Ski2
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
16.8.1.2.3.1	.RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2