Dicots PLAZA 4.5 gene overview : Cc00_g00130

Gene: Cc00_g00130 (Coffea canephora)

Overview

Gene Identifier: Cc00_g00130
Transcript Identifier: Cc00_g00130.1
Gene Type: Coding gene
Location: chr0 : 261566-267583 : positive

Family Information

Homologous gene family: HOM04D000170
(1155 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000207
(670 genes in 52 species)
specific family

Descriptions

Description: Putative U-box domain-containing protein 35

Identifiers

Type	Value
tid	GSCOCT00036088001
id	GSCOCG00036088001
pid	GSCOCP00036088001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0006950	IEA	InterPro	response to stress

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
IPR000719	Protein kinase domain
IPR006016	UspA
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.39.2	.Protein modification.phosphorylation.TKL protein kinase superfamily.RLCK-IX receptor-like protein kinase families.receptor-like protein kinase (RLCK-IXb)