Dicots PLAZA 4.5 gene overview : Cc00_g00120

Gene: Cc00_g00120 (Coffea canephora)

Overview

Gene Identifier: Cc00_g00120
Transcript Identifier: Cc00_g00120.1
Gene Type: Coding gene
Location: chr0 : 256830-259688 : positive

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001290
(215 genes in 49 species)
specific family

Descriptions

Description: Probable LRR receptor-like serine/threonine-protein kinase RLK

Identifiers

Type	Value
tid	GSCOCT00036087001
id	GSCOCG00036087001
pid	GSCOCP00036087001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0009860	IEA	PLAZA Integrative Orthology	pollen tube growth	AT2G07040
GO:0009846	IEA	PLAZA Integrative Orthology	pollen germination	AT2G07040
GO:0080092	IEA	PLAZA Integrative Orthology	regulation of pollen tube growth	AT3G20190

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	IEA	InterPro	protein binding
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT2G07040

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045177	IEA	PLAZA Integrative Orthology	apical part of cell	AT5G35390
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT2G07040
GO:0016324	IEA	PLAZA Integrative Orthology	apical plasma membrane	AT5G35390
GO:0090406	IEA	PLAZA Integrative Orthology	pollen tube	AT2G07040

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR000719	Protein kinase domain
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR001611	Leucine-rich repeat
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.3	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-III)