Dicots PLAZA 4.5 gene overview : Carubv10011977m.g

Gene: Carubv10011977m.g (Capsella rubella)

Overview

Gene Identifier: Carubv10011977m.g
Transcript Identifier: Carubv10011977m
Gene Type: Coding gene
Location: scaffold_1 : 16448103-16449526 : negative

Family Information

Homologous gene family: HOM04D000075
(2009 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000457
(427 genes in 53 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	Carubv10011977m.v1.0
id	Carubv10011977m.g.v1.0
pacid	20888818

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016747	IEA	InterPro	transferase activity, transferring acyl groups other than amino-acyl groups

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003480	Transferase

Mapman id	Description
21.6.1.1	.Cell wall organisation.lignin.monolignol biosynthesis.hydroxycinnamoyl-CoA:quinate/shikimate O-hydroxycinnamoyltransferase (HCT)