Dicots PLAZA 4.5 gene overview : Ca_15064.g

Gene: Ca_15064.g (Cicer arietinum)

Overview

Gene Identifier: Ca_15064.g
Transcript Identifier: Ca_15064
Gene Type: Coding gene
Location: Ca8 : 1155264-1155851 : negative

Family Information

Homologous gene family: HOM04D000079
(1959 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000019
(1875 genes in 53 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	Q9C9I2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003700	IEA	InterPro	transcription factor activity, sequence-specific DNA binding
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001471	AP2/ERF domain
IPR017392	AP2/ERF transcription factor ERF/PTI6
IPR016177	DNA-binding domain

Mapman id	Description
15.5.7.2	.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)