Dicots PLAZA 4.5 gene overview : Ca_15054.g

Gene: Ca_15054.g (Cicer arietinum)

Overview

Gene Identifier: Ca_15054.g
Transcript Identifier: Ca_15054
Gene Type: Coding gene
Location: Ca8 : 1236487-1238351 : negative

Family Information

Homologous gene family: HOM04D000297
(742 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000215
(656 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	F4HUK6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008152	IEA	InterPro	metabolic process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003824	IEA	InterPro	catalytic activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005777	IEA	PLAZA Integrative Orthology	peroxisome	AT1G20560

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR025110	AMP-binding enzyme, C-terminal domain
IPR000873	AMP-dependent synthetase/ligase
IPR020845	AMP-binding, conserved site

Mapman id	Description
35.1	not assigned.annotated