Dicots PLAZA 4.5 gene overview : Ca_15029.g

Gene: Ca_15029.g (Cicer arietinum)

Overview

Gene Identifier: Ca_15029.g
Transcript Identifier: Ca_15029
Gene Type: Coding gene
Location: Ca8 : 1442281-1442677 : negative

Family Information

Homologous gene family: HOM04D000007
(6312 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D001270
(217 genes in 46 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	Q8GV05

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010026	IEA	PLAZA Integrative Orthology	trichome differentiation	AT4G01060
GO:2000039	IEA	PLAZA Integrative Orthology	regulation of trichome morphogenesis	AT2G30432
GO:0010228	IEA	PLAZA Integrative Orthology	vegetative to reproductive phase transition of meristem	AT4G01060
GO:0030154	IEA	PLAZA Integrative Orthology	cell differentiation	AT2G46410
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT4G01060
GO:0009913	IEA	PLAZA Integrative Orthology	epidermal cell differentiation	AT2G46410
GO:0048629	IEA	PLAZA Integrative Orthology	trichome patterning	AT2G30420
GO:0009788	IEA	PLAZA Integrative Orthology	negative regulation of abscisic acid-activated signaling pathway	AT4G01060
GO:0048765	IEA	PLAZA Integrative Orthology	root hair cell differentiation	AT4G01060
GO:0080147	IEA	PLAZA Integrative Orthology	root hair cell development	AT2G30420
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT2G46410
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT2G46410
GO:0010091	IEA	PLAZA Integrative Orthology	trichome branching	AT5G53200
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT5G53200
GO:1900033	IEA	PLAZA Integrative Orthology	negative regulation of trichome patterning	AT2G30420
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT4G01060
GO:0010063	IEA	PLAZA Integrative Orthology	positive regulation of trichoblast fate specification	AT2G46410

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT2G46410
GO:0008022	IEA	PLAZA Integrative Orthology	protein C-terminus binding	AT4G01060

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT2G46410

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.2	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)