Dicots PLAZA 4.5 gene overview : Ca_11906.g

Gene: Ca_11906.g (Cicer arietinum)

Overview

Gene Identifier: Ca_11906.g
Transcript Identifier: Ca_11906
Gene Type: Coding gene
Location: Ca8 : 292388-295278 : positive

Family Information

Homologous gene family: HOM04D001543
(196 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D007792
(65 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	A9A3L9

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006364	IEA	InterPro	rRNA processing
GO:0070475	IEA	PLAZA Homology (enrichment)	rRNA base methylation	HOM04D001543
GO:0030488	IEA	PLAZA Homology (enrichment)	tRNA methylation	HOM04D001543

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008173	IEA	InterPro	RNA methyltransferase activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0051536	IEA	InterPro	iron-sulfur cluster binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004383	Ribosomal RNA large subunit methyltransferase RlmN/Cfr
IPR007197	Radical SAM

Mapman id	Description
35.2	not assigned.not annotated