Dicots PLAZA 4.5 gene overview : Ca_11857.g

Gene: Ca_11857.g (Cicer arietinum)

Overview

Gene Identifier: Ca_11857.g
Transcript Identifier: Ca_11857
Gene Type: Coding gene
Location: Ca8 : 705742-708414 : positive

Family Information

Homologous gene family: HOM04D000001
(15702 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000001
(8914 genes in 52 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	Q9LUJ2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010027	IEA	PLAZA Integrative Orthology	thylakoid membrane organization	AT3G22690
GO:0010380	IEA	PLAZA Integrative Orthology	regulation of chlorophyll biosynthetic process	AT3G22690
GO:0009451	IEA	PLAZA Integrative Orthology	RNA modification	AT3G22690
GO:0048564	IEA	PLAZA Integrative Orthology	photosystem I assembly	AT3G22690
GO:0010207	IEA	PLAZA Integrative Orthology	photosystem II assembly	AT3G22690
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT3G22690

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT3G22690

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR002885	Pentatricopeptide repeat

Mapman id	Description
16.12.5.5.2	.RNA processing.organelle machinery.RNA editing.plastidial RNA editing factor activities (PPR-type).RNA editing factor (YS1)