Dicots PLAZA 4.5 gene overview : Ca_11853.g

Gene: Ca_11853.g (Cicer arietinum)

Overview

Gene Identifier: Ca_11853.g
Transcript Identifier: Ca_11853
Gene Type: Coding gene
Location: Ca8 : 720033-726342 : negative

Family Information

Homologous gene family: HOM04D002221
(145 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	Q5EBA1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009939	IEA	PLAZA Tree-based Orthology	positive regulation of gibberellic acid mediated signaling pathway	LOC_Os03g53500
GO:0010929	IEA	PLAZA Tree-based Orthology	positive regulation of auxin mediated signaling pathway	LOC_Os03g53500
GO:0016070	IEA	PLAZA Integrative Orthology	RNA metabolic process	AT4G14790
GO:0080038	IEA	PLAZA Tree-based Orthology	positive regulation of cytokinin-activated signaling pathway	LOC_Os03g53500
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT4G14790
GO:1902584	IEA	PLAZA Tree-based Orthology	positive regulation of response to water deprivation	LOC_Os03g53500
GO:1901002	IEA	PLAZA Tree-based Orthology	positive regulation of response to salt stress	LOC_Os03g53500
GO:0009561	IEA	PLAZA Integrative Orthology	megagametogenesis	AT4G14790
GO:0009651	IEA	PLAZA Tree-based Orthology	response to salt stress	LOC_Os03g53500

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016817	IEA	InterPro	hydrolase activity, acting on acid anhydrides
GO:0003724	IEA	PLAZA Tree-based Orthology	RNA helicase activity	LOC_Os03g53500
GO:0003678	IEA	PLAZA Tree-based Orthology	DNA helicase activity	LOC_Os03g53500
GO:0004004	IEA	PLAZA Integrative Orthology	ATP-dependent RNA helicase activity	AT4G14790
GO:0016887	IEA	PLAZA Tree-based Orthology	ATPase activity	LOC_Os03g53500

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT4G14790

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR022192	Mitochondrial degradasome RNA helicase subunit, C-terminal domain
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated