Dicots PLAZA 4.5 gene overview : Ca_00018.g

Gene: Ca_00018.g (Cicer arietinum)

Overview

Gene Identifier: Ca_00018.g
Transcript Identifier: Ca_00018
Gene Type: Coding gene
Location: Ca1 : 224192-224992 : negative

Family Information

Homologous gene family: HOM04D000034
(2798 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000134
(846 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	O04486

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000911	IEA	PLAZA Integrative Orthology	cytokinesis by cell plate formation	AT1G09630

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003924	IEA	InterPro	GTPase activity
GO:0005525	IEA	InterPro	GTP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G09630
GO:0009504	IEA	PLAZA Integrative Orthology	cell plate	AT1G09630
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G09630
GO:0005768	IEA	PLAZA Integrative Orthology	endosome	AT1G09630

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001806	Small GTPase superfamily
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR005225	Small GTP-binding protein domain

Mapman id	Description
22.8.1.1	.Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase