Dicots PLAZA 4.5 gene overview : Ca_00010.g

Gene: Ca_00010.g (Cicer arietinum)

Overview

Gene Identifier: Ca_00010.g
Transcript Identifier: Ca_00010
Gene Type: Coding gene
Location: Ca1 : 154942-160324 : positive

Family Information

Homologous gene family: HOM04D000109
(1532 genes in 53 species)
specific family
Orthologous gene family: ORTHO04D000464
(423 genes in 53 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	Q8L7G0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0009725	IEA	InterPro	response to hormone
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT1G59750
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT1G59750
GO:0010150	IEA	PLAZA Integrative Orthology	leaf senescence	AT1G59750
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT1G59750

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding
GO:0005515	IEA	InterPro	protein binding
GO:0016004	IEA	PLAZA Integrative Orthology	phospholipase activator activity	AT1G59750
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G59750
GO:0042802	IEA	PLAZA Integrative Orthology	identical protein binding	AT1G59750

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	InterPro	nucleus
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT1G59750

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003340	B3 DNA binding domain
IPR015300	DNA-binding pseudobarrel domain
IPR010525	Auxin response factor
IPR033389	AUX/IAA domain
IPR000270	PB1 domain

Mapman id	Description
15.5.5.1	.RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF)