Dicots PLAZA 4.5 gene overview : Ca_00009.g

Gene: Ca_00009.g (Cicer arietinum)

Overview

Gene Identifier: Ca_00009.g
Transcript Identifier: Ca_00009
Gene Type: Coding gene
Location: Ca1 : 127549-129554 : negative

Family Information

Homologous gene family: HOM04D000015
(4009 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003896
(100 genes in 50 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
Swissprot	Q93VV5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006810	IEA	InterPro	transport
GO:0006857	IEA	InterPro	oligopeptide transport
GO:0009624	IEA	PLAZA Integrative Orthology	response to nematode	AT1G59740

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005215	IEA	InterPro	transporter activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016020	IEA	InterPro	membrane
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G33440

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000109	Proton-dependent oligopeptide transporter family
IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
IPR020846	Major facilitator superfamily domain

Mapman id	Description
24.2.2.9	.Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (NRT1/PTR)