Dicots PLAZA 4.5 gene overview : COL.COLO4_29186

Gene: COL.COLO4_29186 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_29186
Transcript Identifier: COL.rna27903
Gene Type: Coding gene
Location: AWUE01020256.1 : 21748-28806 : negative

Family Information

Homologous gene family: HOM04D001240
(238 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001911
(166 genes in 53 species)
specific family

Descriptions

Description: Uridine kinase

Identifiers

Type	Value
tid	rna27903
id	gene29158
id	COLO4_29186
pid	OMO69236.1
UniProtKB	A0A1R3HFU0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009116	IEA	InterPro	nucleoside metabolic process
GO:0008152	IEA	InterPro	metabolic process
GO:0044211	IEA	UniProt	CTP salvage
GO:0044206	IEA	UniProt	UMP salvage

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008168	IEA	UniProt	methyltransferase activity
GO:0008168	IEA	InterPro	methyltransferase activity
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	InterPro	kinase activity
GO:0004849	IEA	UniProt	uridine kinase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016021	IEA	UniProt	integral component of membrane
GO:0005802	IEA	PLAZA Integrative Orthology	trans-Golgi network	AT5G14430
GO:0005768	IEA	PLAZA Integrative Orthology	endosome	AT5G14430
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT5G14430
GO:0009505	IEA	PLAZA Integrative Orthology	plant-type cell wall	AT5G14430
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT5G14430

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000836	Phosphoribosyltransferase domain
IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase
IPR006083	Phosphoribulokinase/uridine kinase
IPR000764	Uridine kinase-like
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR029057	Phosphoribosyltransferase-like

Mapman id	Description
6.2.2.1	.Nucleotide metabolism.pyrimidines.salvage pathway.uridine/cytidine kinase (UCK)