Dicots PLAZA 4.5 gene overview : COL.COLO4_28787

Gene: COL.COLO4_28787 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_28787
Transcript Identifier: COL.rna27505
Gene Type: Coding gene
Location: AWUE01020048.1 : 45347-45772 : positive

Family Information

Homologous gene family: HOM04D000075
(2009 genes in 54 species)
specific family
Orthologous gene family: ORTHO04D000457
(427 genes in 53 species)
specific family

Duplication type: Tandem duplicate

Descriptions

Description: Transferase

Identifiers

Type	Value
tid	rna27505
id	gene28759
id	COLO4_28787
pid	OMO70074.1
UniProtKB	A0A1R3HIH7

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016747	IEA	UniProt	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016747	IEA	InterPro	transferase activity, transferring acyl groups other than amino-acyl groups

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003480	Transferase

Mapman id	Description
35.1	not assigned.annotated