Dicots PLAZA 4.5 gene overview : COL.COLO4_24837

Gene: COL.COLO4_24837 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_24837
Transcript Identifier: COL.rna23571
Gene Type: Coding gene
Location: AWUE01018819.1 : 67841-70914 : positive

Family Information

Homologous gene family: HOM04D000061
(2190 genes in 49 species)
specific family
Orthologous gene family: ORTHO04D000094
(1013 genes in 47 species)
specific family

Descriptions

Description: hypothetical protein

Identifiers

Type	Value
tid	rna23571
id	gene24809
id	COLO4_24837
pid	OMO78115.1
UniProtKB	A0A1R3I689

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	UniProt	regulation of transcription, DNA-templated
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	PLAZA Homology (enrichment)	zinc ion binding	HOM04D000061

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR031052	FHY3/FAR1 family
IPR004330	FAR1 DNA binding domain

Mapman id	Description
15.5.46	.RNA biosynthesis.transcriptional regulation.transcription factor (FAR1)