Dicots PLAZA 4.5 gene overview : COL.COLO4_23415

Gene: COL.COLO4_23415 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_23415
Transcript Identifier: COL.rna22156
Gene Type: Coding gene
Location: AWUE01018196.1 : 29266-32690 : negative

Family Information

Homologous gene family: HOM04D005570
(69 genes in 52 species)
specific family

Descriptions

Description: hypothetical protein

Identifiers

Type	Value
tid	rna22156
id	COLO4_23415
id	gene23387
pid	OMO81838.1
UniProtKB	A0A1R3IGX0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0015919	IEA	UniProt	peroxisomal membrane transport
GO:0015919	IEA	InterPro	peroxisomal membrane transport
GO:0043574	IEA	PLAZA Integrative Orthology	peroxisomal transport	AT3G10572

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G10572

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT3G10572
GO:0005777	IEA	PLAZA Integrative Orthology	peroxisome	AT3G10572
GO:0016021	IEA	UniProt	integral component of membrane
GO:0005622	IEA	UniProt	intracellular

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR034571	Protein APEM9

Mapman id	Description
23.4.1.5.2	.Protein translocation.peroxisome.importomer translocation system.receptor export system.PEX1-PEX6 recruitment component APM9