Dicots PLAZA 4.5 gene overview : COL.COLO4_12606

Gene: COL.COLO4_12606 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_12606
Transcript Identifier: COL.rna11395
Gene Type: Coding gene
Location: AWUE01014934.1 : 34152-36650 : negative

Family Information

Homologous gene family: HOM04D000952
(294 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D006807
(70 genes in 54 species)
specific family

Descriptions

Description: hypothetical protein

Identifiers

Type	Value
tid	rna11395
id	COLO4_12606
id	gene12578
pid	OMP00510.1
UniProtKB	A0A1R3K090

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006614	IEA	UniProt	SRP-dependent cotranslational protein targeting to membrane
GO:0006614	IEA	InterPro	SRP-dependent cotranslational protein targeting to membrane
GO:0010027	IEA	PLAZA Integrative Orthology	thylakoid membrane organization	AT2G45770
GO:0045038	IEA	PLAZA Integrative Orthology	protein import into chloroplast thylakoid membrane	AT2G45770
GO:0009772	IEA	PLAZA Integrative Orthology	photosynthetic electron transport in photosystem II	AT2G45770

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005525	IEA	UniProt	GTP binding
GO:0005525	IEA	InterPro	GTP binding
GO:0008312	IEA	PLAZA Homology (enrichment)	7S RNA binding	HOM04D000952
GO:0003924	IEA	PLAZA Homology (enrichment)	GTPase activity	HOM04D000952
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT2G45770

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005622	IEA	UniProt	intracellular
GO:0048500	IEA	PLAZA Homology (enrichment)	signal recognition particle	HOM04D000952
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT2G45770

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR004390	Signal-recognition particle receptor FtsY
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain
IPR013822	Signal recognition particle, SRP54 subunit, helical bundle
IPR003593	AAA+ ATPase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
23.1.7.4	.Protein translocation.chloroplast.thylakoid membrane SRP insertion system.SRP receptor protein (cpFtsY)