Dicots PLAZA 4.5 gene overview : COL.COLO4_10682

Gene: COL.COLO4_10682 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_10682
Transcript Identifier: COL.rna9477
Gene Type: Coding gene
Location: AWUE01014570.1 : 98514-100238 : negative

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D010741
(27 genes in 22 species)
specific family

Descriptions

Description: hypothetical protein

Identifiers

Type	Value
tid	rna9477
id	COLO4_10682
id	gene10654
pid	OMP02973.1
UniProtKB	A0A1R3K7A1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	UniProt	protein kinase activity
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	IEA	PLAZA Homology (enrichment)	protein binding	HOM04D000036

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
35.1	not assigned.annotated