Dicots PLAZA 4.5 gene overview : COL.COLO4_07519

Gene: COL.COLO4_07519 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_07519
Transcript Identifier: COL.rna6328
Gene Type: Coding gene
Location: AWUE01013341.1 : 544-2332 : positive

Family Information

Homologous gene family: HOM04D005255
(72 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D007277
(68 genes in 55 species)
specific family

Descriptions

Description: hypothetical protein

Identifiers

Type	Value
tid	rna6328
id	COLO4_07519
id	gene7491
pid	OMP07224.1
UniProtKB	A0A1R3KJK3

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010206	IEA	PLAZA Integrative Orthology	photosystem II repair	AT1G55480
GO:0015979	IEA	PLAZA Integrative Orthology	photosynthesis	AT1G55480
GO:0010207	IEA	PLAZA Integrative Orthology	photosystem II assembly	AT1G55480
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G55480
GO:0009644	IEA	PLAZA Integrative Orthology	response to high light intensity	AT1G55480
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT1G55480

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0035448	IEA	PLAZA Integrative Orthology	extrinsic component of thylakoid membrane	AT1G55480
GO:0031969	IEA	PLAZA Integrative Orthology	chloroplast membrane	AT1G55480
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT1G55480
GO:0009579	IEA	PLAZA Integrative Orthology	thylakoid	AT1G55480
GO:0009535	IEA	PLAZA Integrative Orthology	chloroplast thylakoid membrane	AT1G55480
GO:0009575	IEA	PLAZA Integrative Orthology	chromoplast stroma	AT1G55480
GO:0009534	IEA	PLAZA Integrative Orthology	chloroplast thylakoid	AT1G55480
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT1G55480
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT1G55480

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR013026	Tetratricopeptide repeat-containing domain
IPR019734	Tetratricopeptide repeat
IPR001478	PDZ domain

Mapman id	Description
1.1.1.3.16	Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.assembly factor (MET1)