Dicots PLAZA 4.5 gene overview : COL.COLO4_01135

Gene: COL.COLO4_01135 (Corchorus olitorius)

Overview

Gene Identifier: COL.COLO4_01135
Transcript Identifier: COL.rna742
Gene Type: Coding gene
Location: AWUE01003533.1 : 894-1880 : positive

Family Information

Homologous gene family: HOM04D037356
(2 genes in 2 species)
specific family

Descriptions

Description: Helix-turn-helix type 3

Identifiers

Type	Value
tid	rna742
id	COLO4_01135
id	gene1125
pid	OMP13695.1
UniProtKB	A0A1R3L2Y0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043565	IEA	UniProt	sequence-specific DNA binding
GO:0043565	IEA	InterPro	sequence-specific DNA binding
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001387	Cro/C1-type helix-turn-helix domain
IPR010982	Lambda repressor-like, DNA-binding domain

Mapman id	Description
35.2	not assigned.not annotated