Dicots PLAZA 4.5 gene overview : Bv8_186130_dkew

Gene: Bv8_186130_dkew (Beta vulgaris)

Overview

Gene Identifier: Bv8_186130_dkew
Transcript Identifier: Bv8_186130_dkew.t1
Gene Type: Coding gene
Location: Bvchr8.sca004 : 2119150-2121528 : negative

Family Information

Homologous gene family: HOM04D005255
(72 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D007277
(68 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010206	IEA	PLAZA Integrative Orthology	photosystem II repair	AT1G55480
GO:0015979	IEA	PLAZA Integrative Orthology	photosynthesis	AT1G55480
GO:0010207	IEA	PLAZA Integrative Orthology	photosystem II assembly	AT1G55480
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G55480
GO:0009644	IEA	PLAZA Integrative Orthology	response to high light intensity	AT1G55480
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT1G55480

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	PLAZA Homology (enrichment)	protein binding	HOM04D005255

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0035448	IEA	PLAZA Integrative Orthology	extrinsic component of thylakoid membrane	AT1G55480
GO:0031969	IEA	PLAZA Integrative Orthology	chloroplast membrane	AT1G55480
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT1G55480
GO:0009579	IEA	PLAZA Integrative Orthology	thylakoid	AT1G55480
GO:0009535	IEA	PLAZA Integrative Orthology	chloroplast thylakoid membrane	AT1G55480
GO:0009575	IEA	PLAZA Integrative Orthology	chromoplast stroma	AT1G55480
GO:0009534	IEA	PLAZA Integrative Orthology	chloroplast thylakoid	AT1G55480
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT1G55480
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT1G55480

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

No InterPro domains detected for this gene.

Mapman id	Description
1.1.1.3.16	Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.assembly factor (MET1)