Gene: Brara.E00088 (Brassica rapa)

Overview top

Gene Identifier
Brara.E00088
Transcript Identifier
Brara.E00088.1
Gene Type
Coding gene
Location
A05 : 536769-538665 : positive

Family Information

Homologous gene family
HOM04D000553
(472 genes in 53 species)
specific family
Duplication type
Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
tidBrara.E00088.1.v1.3
idBrara.E00088.v1.3
pidBrara.E00088.1.p
pacid30624701

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010047
IEA
PLAZA Tree-based Orthologyfruit dehiscence AT5G67110
GO:0010100
IEA
PLAZA Tree-based Orthologynegative regulation of photomorphogenesis AT2G20180
GO:0010244
IEA
PLAZA Tree-based Orthologyresponse to low fluence blue light stimulus by blue low-fluence system AT3G59060
GO:0010029
IEA
PLAZA Tree-based Orthologyregulation of seed germination AT2G20180
GO:0010600
IEA
PLAZA Tree-based Orthologyregulation of auxin biosynthetic process AT3G59060
GO:0010928
IEA
PLAZA Tree-based Orthologyregulation of auxin mediated signaling pathway AT3G59060
GO:0009738
IEA
PLAZA Tree-based Orthologyabscisic acid-activated signaling pathway AT1G02340
GO:0009639
IEA
PLAZA Tree-based Orthologyresponse to red or far red light AT1G09530
GO:0009959
IEA
PLAZA Tree-based Orthologynegative gravitropism AT2G20180
GO:0007623
IEA
PLAZA Tree-based Orthologycircadian rhythm AT4G36930
GO:0009740
IEA
PLAZA Tree-based Orthologygibberellic acid mediated signaling pathway AT1G09530
GO:0009641
IEA
PLAZA Integrative Orthologyshade avoidance AT2G46970
GO:0009785
IEA
PLAZA Tree-based Orthologyblue light signaling pathway AT1G02340
GO:0009642
IEA
PLAZA Tree-based Orthologyresponse to light intensity AT1G02340
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G46970
GO:0007165
IEA
PLAZA Tree-based Orthologysignal transduction AT1G09530
GO:0009585
IEA
PLAZA Tree-based Orthologyred, far-red light phototransduction AT3G59060
GO:0010099
IEA
PLAZA Tree-based Orthologyregulation of photomorphogenesis AT2G20180
GO:0010154
IEA
PLAZA Tree-based Orthologyfruit development AT4G36930
GO:0010114
IEA
PLAZA Tree-based Orthologyresponse to red light AT4G36930
GO:0010017
IEA
PLAZA Integrative Orthologyred or far-red light signaling pathway AT2G46970
GO:0010218
IEA
PLAZA Tree-based Orthologyresponse to far red light AT1G02340
GO:0009704
IEA
PLAZA Tree-based Orthologyde-etiolation AT1G09530
GO:0048440
IEA
PLAZA Tree-based Orthologycarpel development AT4G36930
GO:0009409
IEA
PLAZA Tree-based Orthologyresponse to cold AT4G36930
GO:0031539
IEA
PLAZA Tree-based Orthologypositive regulation of anthocyanin metabolic process AT1G09530
GO:0009416
IEA
PLAZA Tree-based Orthologyresponse to light stimulus AT5G61270
GO:0080113
IEA
PLAZA Tree-based Orthologyregulation of seed growth LOC_Os05g04740
GO:0006783
IEA
PLAZA Tree-based Orthologyheme biosynthetic process AT2G20180
GO:0010161
IEA
PLAZA Tree-based Orthologyred light signaling pathway AT2G43010
GO:0009693
IEA
PLAZA Tree-based Orthologyethylene biosynthetic process AT3G59060
GO:0010187
IEA
PLAZA Tree-based Orthologynegative regulation of seed germination AT4G36930
GO:0015995
IEA
PLAZA Tree-based Orthologychlorophyll biosynthetic process AT2G20180

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003712
IEA
PLAZA Tree-based Orthologytranscription cofactor activity AT1G02340
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT2G46970
GO:0003677
IEA
PLAZA Tree-based OrthologyDNA binding AT1G09530
GO:0042802
IEA
PLAZA Tree-based Orthologyidentical protein binding AT1G09530
GO:0010313
IEA
PLAZA Tree-based Orthologyphytochrome binding AT2G20180
GO:0003700
IEA
PLAZA Tree-based Orthologytranscription factor activity, sequence-specific DNA binding AT5G61270
GO:0003690
IEA
PLAZA Tree-based Orthologydouble-stranded DNA binding AT5G61270

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
PLAZA Tree-based Orthologynucleus LOC_Os12g40590
GO:0005829
IEA
PLAZA Tree-based Orthologycytosol AT1G02340
GO:0016607
IEA
PLAZA Tree-based Orthologynuclear speck AT5G61270

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011598Myc-type, basic helix-loop-helix (bHLH) domain

Mapman id Description
15.5.32.RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)