Gene: Bo9g139390 (Brassica oleracea)

Overview top

Gene Identifier
Bo9g139390
Transcript Identifier
Bo9g139390.1
Gene Type
Coding gene
Location
C9 : 42409404-42413542 : positive

Family Information

Homologous gene family
HOM04D001318
(223 genes in 53 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
telomeric repeat binding protein 1

Identifiers

Type Value
tidtranscript:Bo9g139390.1
uniprotA0A0D3ECS3

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006233
IEA
UniProtdTDP biosynthetic process
GO:0006233
IEA
InterProdTDP biosynthetic process
GO:0009873
IEA
UniProtethylene-activated signaling pathway
GO:0009733
IEA
UniProtresponse to auxin
GO:0046686
IEA
UniProtresponse to cadmium ion
GO:0009739
IEA
UniProtresponse to gibberellin
GO:0009753
IEA
UniProtresponse to jasmonic acid
GO:0009751
IEA
UniProtresponse to salicylic acid
GO:0009651
IEA
UniProtresponse to salt stress
GO:0032204
IEA
PLAZA Tree-based Orthologyregulation of telomere maintenance LOC_Os02g57270
GO:0010498
IEA
PLAZA Tree-based Orthologyproteasomal protein catabolic process AT5G13820
GO:0010255
IEA
PLAZA Tree-based Orthologyglucose mediated signaling pathway AT5G13820
GO:0009737
IEA
PLAZA Integrative Orthologyresponse to abscisic acid AT3G46590
GO:0009723
IEA
PLAZA Integrative Orthologyresponse to ethylene AT3G46590
GO:0009553
IEA
PLAZA Tree-based Orthologyembryo sac development AT5G13820
GO:0007133
IEA
PLAZA Tree-based Orthologymeiotic anaphase I LOC_Os02g57270
GO:0000723
IEA
PLAZA Tree-based Orthologytelomere maintenance AT5G13820
GO:0009555
IEA
PLAZA Tree-based Orthologypollen development AT5G13820
GO:0009793
IEA
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G59440

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004798
IEA
UniProtthymidylate kinase activity
GO:0004798
IEA
InterProthymidylate kinase activity
GO:0005524
IEA
UniProtATP binding
GO:0005524
IEA
InterProATP binding
GO:0005515
IEA
InterProprotein binding
GO:0003677
IEA
InterProDNA binding
GO:0003691
IEA
UniProtdouble-stranded telomeric DNA binding
GO:0042162
IEA
PLAZA Integrative Orthologytelomeric DNA binding AT3G46590
GO:0008301
IEA
PLAZA Integrative OrthologyDNA binding, bending AT3G46590
GO:0042803
IEA
PLAZA Tree-based Orthologyprotein homodimerization activity LOC_Os02g57270

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
UniProtcytoplasm
GO:0031965
IEA
UniProtnuclear membrane
GO:0005886
IEA
UniProtplasma membrane
GO:0005829
IEA
PLAZA Integrative Orthologycytosol AT5G59440
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion AT5G59440
GO:0016020
IEA
PLAZA Integrative Orthologymembrane AT5G59430
GO:0005634
IEA
PLAZA Tree-based Orthologynucleus AT5G13820
GO:0000781
IEA
PLAZA Tree-based Orthologychromosome, telomeric region AT5G13820
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm AT5G59440
GO:0000502
IEA
PLAZA Tree-based Orthologyproteasome complex AT5G13820

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018094Thymidylate kinase
IPR018095Thymidylate kinase, conserved site
IPR017930Myb domain
IPR000626Ubiquitin domain
IPR001005SANT/Myb domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR009057Homeobox domain-like
IPR029071Ubiquitin-related domain

Mapman id Description
6.3.2.3.Nucleotide metabolism.deoxynucleotides.salvage pathway.thymidylate kinase
15.5.2.2.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)