Dicots PLAZA 4.5 gene overview : Bo9g043860

Gene: Bo9g043860 (Brassica oleracea)

Overview

Gene Identifier: Bo9g043860
Transcript Identifier: Bo9g043860.1
Gene Type: Coding gene
Location: C9 : 14381224-14383026 : positive

Family Information

Homologous gene family: HOM04D000242
(871 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000255
(614 genes in 54 species)
specific family

Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	transcript:Bo9g043860.1
uniprot	A0A0D3E5A0
refseq_protein	XP_013611329.1
entrez_gene	106318038
refseq_dna	XM_013755875.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016491	IEA	UniProt	oxidoreductase activity
GO:0016491	IEA	InterPro	oxidoreductase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR023210	NADP-dependent oxidoreductase domain
IPR020471	Aldo/keto reductase

Mapman id	Description
50.1.1	.Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor