Dicots PLAZA 4.5 gene overview : Bo6g051340

Gene: Bo6g051340 (Brassica oleracea)

Overview

Gene Identifier: Bo6g051340
Transcript Identifier: Bo6g051340.1
Gene Type: Coding gene
Location: C6 : 14286260-14287768 : positive

Family Information

Homologous gene family: HOM04D005255
(72 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D007277
(68 genes in 55 species)
specific family

Descriptions

Description: protein containing PDZ domain, a K-box domain, and a TPR region

Identifiers

Type	Value
tid	transcript:Bo6g051340.1
uniprot	A0A0D3CSF0
refseq_protein	XP_013591742.1
entrez_gene	106300193
refseq_dna	XM_013736288.1

Toolbox

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...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010207	IEA	UniProt	photosystem II assembly
GO:0010206	IEA	UniProt	photosystem II repair
GO:0009644	IEA	UniProt	response to high light intensity
GO:0009611	IEA	UniProt	response to wounding
GO:0015979	IEA	PLAZA Integrative Orthology	photosynthesis	AT1G55480
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G55480

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0031969	IEA	UniProt	chloroplast membrane
GO:0009570	IEA	UniProt	chloroplast stroma
GO:0009535	IEA	UniProt	chloroplast thylakoid membrane
GO:0009575	IEA	UniProt	chromoplast stroma
GO:0035448	IEA	UniProt	extrinsic component of thylakoid membrane
GO:0009579	IEA	PLAZA Integrative Orthology	thylakoid	AT1G55480
GO:0009534	IEA	PLAZA Integrative Orthology	chloroplast thylakoid	AT1G55480
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT1G55480
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT1G55480

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR019734	Tetratricopeptide repeat
IPR013026	Tetratricopeptide repeat-containing domain
IPR001478	PDZ domain

Mapman id	Description
1.1.1.3.16	Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.assembly factor (MET1)