Dicots PLAZA 4.5 gene overview : Bo4g181980

Gene: Bo4g181980 (Brassica oleracea)

Overview

Gene Identifier: Bo4g181980
Transcript Identifier: Bo4g181980.1
Gene Type: Coding gene
Location: C4 : 47880699-47881953 : negative

Family Information

Homologous gene family: HOM04D001386
(213 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003260
(117 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	transcript:Bo4g181980.1
uniprot	A0A0D3C3Y0
refseq_protein	XP_013633669.1
refseq_protein	XP_013633668.1
entrez_gene	106339413
refseq_dna	XM_013778215.1
refseq_dna	XM_013778214.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046836	IEA	InterPro	glycolipid transport

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0017089	IEA	UniProt	glycolipid transporter activity
GO:0017089	IEA	InterPro	glycolipid transporter activity
GO:0051861	IEA	UniProt	glycolipid binding
GO:0051861	IEA	InterPro	glycolipid binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IEA	UniProt	cytoplasm
GO:0005737	IEA	InterPro	cytoplasm
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT2G33470
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT2G33470

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014830	Glycolipid transfer protein domain

Mapman id	Description
35.1	not assigned.annotated