Dicots PLAZA 4.5 gene overview : Bo4g120210

Gene: Bo4g120210 (Brassica oleracea)

Overview

Gene Identifier: Bo4g120210
Transcript Identifier: Bo4g120210.1
Gene Type: Coding gene
Location: C4 : 31189517-31191792 : negative

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002425
(143 genes in 54 species)
specific family

Descriptions

Description: cyclin-dependent kinase B1;1

Identifiers

Type	Value
tid	transcript:Bo4g120210.1
uniprot	A0A0D3BY61

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0048825	IEA	UniProt	cotyledon development
GO:0010444	IEA	UniProt	guard mother cell differentiation
GO:1902806	IEA	UniProt	regulation of cell cycle G1/S phase transition
GO:0032875	IEA	UniProt	regulation of DNA endoreduplication
GO:2000037	IEA	UniProt	regulation of stomatal complex patterning
GO:0010376	IEA	UniProt	stomatal complex formation
GO:0009826	IEA	UniProt	unidimensional cell growth
GO:0042023	IEA	PLAZA Integrative Orthology	DNA endoreduplication	AT3G54180

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0004674	IEA	UniProt	protein serine/threonine kinase activity
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G54180

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IEA	UniProt	cytoplasm
GO:0005634	IEA	UniProt	nucleus

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.2	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKB
18.4.3.1.2	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKB)