Dicots PLAZA 4.5 gene overview : Bo3g073040

Gene: Bo3g073040 (Brassica oleracea)

Overview

Gene Identifier: Bo3g073040
Transcript Identifier: Bo3g073040.1
Gene Type: Coding gene
Location: C3 : 28113523-28118424 : negative

Family Information

Homologous gene family: HOM04D003141
(105 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D004852
(86 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
tid	transcript:Bo3g073040.1
uniprot	A0A0D3BC46
refseq_protein	XP_013628970.1
entrez_gene	106335091
refseq_dna	XM_013773516.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006508	IEA	UniProt	proteolysis
GO:0006508	IEA	InterPro	proteolysis
GO:0016485	IEA	PLAZA Integrative Orthology	protein processing	AT3G19170
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT3G19170

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003824	IEA	UniProt	catalytic activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0046872	IEA	UniProt	metal ion binding
GO:0046872	IEA	InterPro	metal ion binding
GO:0004222	IEA	PLAZA Integrative Orthology	metalloendopeptidase activity	AT3G19170
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G19170

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT3G19170
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT3G19170
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT3G19170
GO:0009570	IEA	PLAZA Integrative Orthology	chloroplast stroma	AT3G19170
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT3G19170

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR007863	Peptidase M16, C-terminal
IPR011765	Peptidase M16, N-terminal
IPR013578	Peptidase M16C associated
IPR011249	Metalloenzyme, LuxS/M16 peptidase-like

Mapman id	Description
18.10.2.6	.Protein modification.targeting peptide maturation.mitochondrion.targeting peptid degrading peptidase (PreP)