Dicots PLAZA 4.5 gene overview : Bo3g032650

Gene: Bo3g032650 (Brassica oleracea)

Overview

Gene Identifier: Bo3g032650
Transcript Identifier: Bo3g032650.1
Gene Type: Coding gene
Location: C3 : 12552201-12553415 : positive

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D002425
(143 genes in 54 species)
specific family

Descriptions

Description: cyclin-dependent kinase B1;2

Identifiers

Type	Value
tid	transcript:Bo3g032650.1
uniprot	A0A0D3B5N9
refseq_protein	XP_013625096.1
entrez_gene	106331319
refseq_dna	XM_013769642.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0010444	IEA	UniProt	guard mother cell differentiation
GO:1902806	IEA	UniProt	regulation of cell cycle G1/S phase transition
GO:0032875	IEA	UniProt	regulation of DNA endoreduplication
GO:2000037	IEA	UniProt	regulation of stomatal complex patterning
GO:0051726	IEA	PLAZA Integrative Orthology	regulation of cell cycle	AT2G38620

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0004674	IEA	UniProt	protein serine/threonine kinase activity
GO:0030332	IEA	PLAZA Integrative Orthology	cyclin binding	AT2G38620
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT2G38620

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR017441	Protein kinase, ATP binding site
IPR008271	Serine/threonine-protein kinase, active site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.2	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKB
18.4.3.1.2	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKB)