Dicots PLAZA 4.5 gene overview : Bo2g140450

Gene: Bo2g140450 (Brassica oleracea)

Overview

Gene Identifier: Bo2g140450
Transcript Identifier: Bo2g140450.1
Gene Type: Coding gene
Location: C2 : 45283054-45286473 : negative

Family Information

Homologous gene family: HOM04D001240
(238 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001235
(219 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Uridine kinase

Identifiers

Type	Value
tid	transcript:Bo2g140450.1
uniprot	A0A0D3AW48
refseq_protein	XP_013615919.1
entrez_gene	106322450
refseq_dna	XM_013760465.1

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009116	IEA	InterPro	nucleoside metabolic process
GO:0044206	IEA	UniProt	UMP salvage
GO:0044206	IEA	InterPro	UMP salvage
GO:0008152	IEA	InterPro	metabolic process
GO:0044211	IEA	UniProt	CTP salvage
GO:2001006	IEA	PLAZA Integrative Orthology	regulation of cellulose biosynthetic process	AT3G27190
GO:0006207	IEA	PLAZA Integrative Orthology	'de novo' pyrimidine nucleobase biosynthetic process	AT3G27190
GO:1901141	IEA	PLAZA Integrative Orthology	regulation of lignin biosynthetic process	AT3G27190
GO:2000904	IEA	PLAZA Integrative Orthology	regulation of starch metabolic process	AT3G27190

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004849	IEA	UniProt	uridine kinase activity
GO:0004849	IEA	InterPro	uridine kinase activity
GO:0005524	IEA	UniProt	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	InterPro	kinase activity
GO:0004845	IEA	PLAZA Integrative Orthology	uracil phosphoribosyltransferase activity	AT3G27190

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G27190
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT3G27190

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000836	Phosphoribosyltransferase domain
IPR029930	Uridine kinase-like protein, plant
IPR006083	Phosphoribulokinase/uridine kinase
IPR000764	Uridine kinase-like
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR029057	Phosphoribosyltransferase-like

Mapman id	Description
6.2.2.1	.Nucleotide metabolism.pyrimidines.salvage pathway.uridine/cytidine kinase (UCK)