Dicots PLAZA 4.5 gene overview : Achn221321

Gene: Achn221321 (Actinidia chinensis)

Overview

Gene Identifier: Achn221321
Transcript Identifier: Achn221321-TA
Gene Type: Coding gene
Location: Chr14 : 2606281-2647338 : positive

Family Information

Homologous gene family: HOM04D000217
(938 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000142
(820 genes in 55 species)
specific family

Duplication type: Block duplicate

Descriptions

Description: Callose synthase; contains IPR003440 (Glycosyl transferase, family 48), IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1), IPR026953 (Callose synthase)

Identifiers

Type	Value

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006075	IEA	InterPro	(1->3)-beta-D-glucan biosynthetic process
GO:0080165	IEA	PLAZA Integrative Orthology	callose deposition in phloem sieve plate	AT1G06490
GO:0010233	IEA	PLAZA Integrative Orthology	phloem transport	AT1G06490

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003843	IEA	InterPro	1,3-beta-D-glucan synthase activity

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000148	IEA	InterPro	1,3-beta-D-glucan synthase complex
GO:0016020	IEA	InterPro	membrane
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT2G31960
GO:0009504	IEA	PLAZA Integrative Orthology	cell plate	AT1G05570
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT1G05570

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR023175	Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain
IPR003440	Glycosyl transferase, family 48
IPR026899	1,3-beta-glucan synthase subunit FKS1-like, domain-1

Mapman id	Description
21.7.1	.Cell wall organisation.callose.callose synthase