Dicots PLAZA 4.5 gene overview : Achn204981

Gene: Achn204981 (Actinidia chinensis)

Overview

Gene Identifier: Achn204981
Transcript Identifier: Achn204981-TA
Gene Type: Coding gene
Location: Chr4 : 344436-346818 : negative

Family Information

Homologous gene family: HOM04D000061
(2190 genes in 49 species)
specific family

Descriptions

Description: Protein FAR1-related sequence 1; contains IPR001878 (Zinc finger, CCHC-type), IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)

Identifiers

Type	Value

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0008270	IEA	InterPro	zinc ion binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001878	Zinc finger, CCHC-type
IPR031052	FHY3/FAR1 family
IPR004330	FAR1 DNA binding domain
IPR007527	Zinc finger, SWIM-type
IPR018289	MULE transposase domain
IPR006564	Zinc finger, PMZ-type

Mapman id	Description
15.5.46	.RNA biosynthesis.transcriptional regulation.transcription factor (FAR1)