Gene: Achn185041 (Actinidia chinensis)

Overview top

Gene Identifier
Achn185041
Transcript Identifier
Achn185041-TA
Gene Type
Coding gene
Location
Chr1 : 5135106-5142505 : positive

Family Information

Homologous gene family
HOM04D000744
(371 genes in 55 species)
specific family
Orthologous gene family
ORTHO04D001200
(223 genes in 51 species)
specific family

Descriptions

Description
Protein VERNALIZATION INSENSITIVE; contains IPR004082 (Protein of unknown function DUF1423, plant), IPR013783 (Immunoglobulin-like fold)

Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010048
IEA
PLAZA Integrative Orthologyvernalization response AT5G57380
GO:0070417
IEA
PLAZA Integrative Orthologycellular response to cold AT5G57380
GO:0010228
IEA
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G30200
GO:0051571
IEA
PLAZA Integrative Orthologypositive regulation of histone H3-K4 methylation AT5G57380
GO:0048587
IEA
PLAZA Integrative Orthologyregulation of short-day photoperiodism, flowering AT4G30200
GO:0001666
IEA
PLAZA Integrative Orthologyresponse to hypoxia AT5G57380
GO:0032922
IEA
PLAZA Integrative Orthologycircadian regulation of gene expression AT4G30200
GO:0009409
IEA
PLAZA Integrative Orthologyresponse to cold AT4G30200
GO:0061087
IEA
PLAZA Integrative Orthologypositive regulation of histone H3-K27 methylation AT5G57380
GO:1900111
IEA
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation AT4G30200
GO:0045814
IEA
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic AT5G57380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0035064
IEA
PLAZA Integrative Orthologymethylated histone binding AT4G30200
GO:0042802
IEA
PLAZA Integrative Orthologyidentical protein binding AT4G30200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031519
IEA
PLAZA Integrative OrthologyPcG protein complex AT4G30200
GO:0009506
IEA
PLAZA Integrative Orthologyplasmodesma AT4G30200
GO:0005634
IEA
PLAZA Integrative Orthologynucleus AT5G57380
GO:0005677
IEA
PLAZA Integrative Orthologychromatin silencing complex AT4G30200
GO:0016607
IEA
PLAZA Integrative Orthologynuclear speck AT5G57380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)