Gene: Achn133771 (Actinidia chinensis)

Overview top

Gene Identifier
Achn133771
Transcript Identifier
Achn133771-TA
Gene Type
Coding gene
Location
Chr19 : 5039538-5045910 : negative

Family Information

Homologous gene family
HOM04D000937
(298 genes in 53 species)
specific family
Orthologous gene family
ORTHO04D001080
(239 genes in 53 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Phytochrome, putative; contains IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core)

Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009584
IEA
InterProdetection of visible light
GO:0018298
IEA
InterProprotein-chromophore linkage
GO:0007165
IEA
InterProsignal transduction
GO:0010201
IEA
PLAZA Tree-based Orthologyresponse to continuous far red light stimulus by the high-irradiance response system AT1G09570
GO:0010202
IEA
PLAZA Tree-based Orthologyresponse to low fluence red light stimulus AT2G18790
GO:2000028
IEA
PLAZA Tree-based Orthologyregulation of photoperiodism, flowering AT2G18790
GO:0010244
IEA
PLAZA Tree-based Orthologyresponse to low fluence blue light stimulus by blue low-fluence system AT2G18790
GO:0031347
IEA
PLAZA Tree-based Orthologyregulation of defense response AT2G18790
GO:0010029
IEA
PLAZA Tree-based Orthologyregulation of seed germination AT2G18790
GO:0015979
IEA
PLAZA Tree-based Orthologyphotosynthesis AT2G18790
GO:0017012
IEA
PLAZA Tree-based Orthologyprotein-phytochromobilin linkage AT2G18790
GO:0010148
IEA
PLAZA Tree-based Orthologytranspiration AT2G18790
GO:0010203
IEA
PLAZA Tree-based Orthologyresponse to very low fluence red light stimulus AT1G09570
GO:0009638
IEA
PLAZA Tree-based Orthologyphototropism AT1G09570
GO:0009867
IEA
PLAZA Tree-based Orthologyjasmonic acid mediated signaling pathway AT2G18790
GO:0009687
IEA
PLAZA Tree-based Orthologyabscisic acid metabolic process AT2G18790
GO:0000724
IEA
PLAZA Tree-based Orthologydouble-strand break repair via homologous recombination LOC_Os03g54084
GO:0009585
IEA
PLAZA Homology (enrichment)red, far-red light phototransduction HOM04D000937
GO:0009266
IEA
PLAZA Tree-based Orthologyresponse to temperature stimulus AT2G18790
GO:0009640
IEA
PLAZA Tree-based Orthologyphotomorphogenesis AT1G09570
GO:0010374
IEA
PLAZA Tree-based Orthologystomatal complex development AT2G18790
GO:0017006
IEA
PLAZA Homology (enrichment)protein-tetrapyrrole linkage HOM04D000937
GO:0017148
IEA
PLAZA Tree-based Orthologynegative regulation of translation AT1G09570
GO:0010017
IEA
PLAZA Tree-based Orthologyred or far-red light signaling pathway AT4G16250
GO:0010617
IEA
PLAZA Tree-based Orthologycircadian regulation of calcium ion oscillation AT2G18790
GO:0046685
IEA
PLAZA Tree-based Orthologyresponse to arsenic-containing substance AT1G09570
GO:0010218
IEA
PLAZA Tree-based Orthologyresponse to far red light AT1G09570
GO:0045892
IEA
PLAZA Tree-based Orthologynegative regulation of transcription, DNA-templated AT2G18790
GO:0009649
IEA
PLAZA Tree-based Orthologyentrainment of circadian clock AT2G18790
GO:0009409
IEA
PLAZA Tree-based Orthologyresponse to cold AT2G18790
GO:0006325
IEA
PLAZA Tree-based Orthologychromatin organization AT2G18790
GO:0009630
IEA
PLAZA Tree-based Orthologygravitropism AT1G09570
GO:0010161
IEA
PLAZA Tree-based Orthologyred light signaling pathway AT1G09570
GO:0007131
IEA
PLAZA Tree-based Orthologyreciprocal meiotic recombination LOC_Os03g54084

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0000155
IEA
InterProphosphorelay sensor kinase activity
GO:0009883
IEA
PLAZA Tree-based Orthologyred or far-red light photoreceptor activity AT1G09570
GO:0004672
IEA
PLAZA Tree-based Orthologyprotein kinase activity AT1G09570
GO:0009881
IEA
PLAZA Homology (enrichment)photoreceptor activity HOM04D000937
GO:0042803
IEA
PLAZA Tree-based Orthologyprotein homodimerization activity AT2G18790
GO:0042802
IEA
PLAZA Tree-based Orthologyidentical protein binding AT1G09570
GO:0003729
IEA
PLAZA Tree-based OrthologymRNA binding AT1G09570
GO:1990841
IEA
PLAZA Tree-based Orthologypromoter-specific chromatin binding AT2G18790
GO:0031517
IEA
PLAZA Tree-based Orthologyred light photoreceptor activity AT2G18790
GO:0031516
IEA
PLAZA Tree-based Orthologyfar-red light photoreceptor activity AT1G09570
GO:0043565
IEA
PLAZA Tree-based Orthologysequence-specific DNA binding AT2G18790

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
PLAZA Tree-based Orthologycytoplasm AT1G09570
GO:0005634
IEA
PLAZA Tree-based Orthologynucleus AT1G09570
GO:0005829
IEA
PLAZA Tree-based Orthologycytosol AT2G18790
GO:0016604
IEA
PLAZA Tree-based Orthologynuclear body AT1G09570

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR029016GAF domain-like
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR013515Phytochrome, central region
IPR003018GAF domain
IPR013767PAS fold
IPR013654PAS fold-2
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR016132Phytochrome chromophore attachment domain
IPR005467Histidine kinase domain
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR001610PAC motif

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)