Dicots PLAZA 4.5 gene overview : Achn039891

Gene: Achn039891 (Actinidia chinensis)

Overview

Gene Identifier: Achn039891
Transcript Identifier: Achn039891-TA
Gene Type: Coding gene
Location: Unknow : 127160680-127169311 : negative

Family Information

Homologous gene family: HOM04D000083
(1914 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D003926
(99 genes in 55 species)
specific family

Descriptions

Description: Cyclin dependent kinase A; contains IPR011009 (Protein kinase-like domain)

Identifiers

Type	Value

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0010444	IEA	PLAZA Integrative Orthology	guard mother cell differentiation	AT3G48750
GO:0010235	IEA	PLAZA Integrative Orthology	guard mother cell cytokinesis	AT3G48750
GO:0098725	IEA	PLAZA Integrative Orthology	symmetric cell division	AT3G48750
GO:0009409	IEA	PLAZA Integrative Orthology	response to cold	AT3G48750
GO:1902806	IEA	PLAZA Integrative Orthology	regulation of cell cycle G1/S phase transition	AT3G48750
GO:0008356	IEA	PLAZA Integrative Orthology	asymmetric cell division	AT3G48750
GO:0042023	IEA	PLAZA Integrative Orthology	DNA endoreduplication	AT3G48750
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT3G48750
GO:0000911	IEA	PLAZA Integrative Orthology	cytokinesis by cell plate formation	AT3G48750
GO:0048229	IEA	PLAZA Integrative Orthology	gametophyte development	AT3G48750
GO:0040020	IEA	PLAZA Integrative Orthology	regulation of meiotic nuclear division	AT3G48750
GO:0008284	IEA	PLAZA Integrative Orthology	positive regulation of cell proliferation	AT3G48750
GO:0009793	IEA	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT3G48750

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding
GO:0016301	IEA	PLAZA Integrative Orthology	kinase activity	AT3G48750
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G48750

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G48750
GO:0010005	IEA	PLAZA Integrative Orthology	cortical microtubule, transverse to long axis	AT3G48750
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT3G48750
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G48750
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT3G48750
GO:0009574	IEA	PLAZA Integrative Orthology	preprophase band	AT3G48750

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR011009	Protein kinase-like domain

Mapman id	Description
13.1.1.2.1	.Cell cycle organisation.cell cycle control.cyclin-dependent regulation.cyclin-dependent protein kinase complex.catalytic component CDKA
18.4.3.1.1	.Protein modification.phosphorylation.CMGC protein kinase superfamily.CDK protein kinase families.protein kinase (CDKA)