Dicots PLAZA 4.5 gene overview : ATR1098G004

Gene: ATR1098G004 (Amborella trichopoda)

Overview

Gene Identifier: ATR1098G004
Transcript Identifier: ATR1098G004.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00092 : 2528035-2533524 : positive

Family Information

Homologous gene family: HOM04D000036
(2681 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001548
(190 genes in 53 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00092.139
id	evm_27.TU.AmTr_v1.0_scaffold00092.139.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00092.139
name	evm_27.model.AmTr_v1.0_scaffold00092.139
pacid	31552072
tid	evm_27.model.AmTr_v1.0_scaffold00092.139.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006468	IEA	InterPro	protein phosphorylation
GO:1901527	IEA	PLAZA Integrative Orthology	abscisic acid-activated signaling pathway involved in stomatal movement	AT4G20940
GO:0007165	IEA	PLAZA Integrative Orthology	signal transduction	AT4G20940
GO:1901528	IEA	PLAZA Integrative Orthology	hydrogen peroxide mediated signaling pathway involved in stomatal movement	AT4G20940
GO:1901529	IEA	PLAZA Integrative Orthology	positive regulation of anion channel activity	AT4G20940

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT4G20940

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR001611	Leucine-rich repeat
IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.3	.Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRR-III)