Dicots PLAZA 4.5 gene overview : ATR0824G197

Gene: ATR0824G197 (Amborella trichopoda)

Overview

Gene Identifier: ATR0824G197
Transcript Identifier: ATR0824G197.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00049 : 2314618-2318255 : positive

Family Information

Homologous gene family: HOM04D000047
(2442 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D000433
(439 genes in 49 species)
specific family

Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00049.137
id	evm_27.TU.AmTr_v1.0_scaffold00049.137.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00049.137
name	evm_27.model.AmTr_v1.0_scaffold00049.137
pacid	31574676
tid	evm_27.model.AmTr_v1.0_scaffold00049.137.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0055114	IEA	InterPro	oxidation-reduction process

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005506	IEA	InterPro	iron ion binding
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	InterPro	heme binding

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
50.1.13	.Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen