Dicots PLAZA 4.5 gene overview : ATR0737G012

Gene: ATR0737G012 (Amborella trichopoda)

Overview

Gene Identifier: ATR0737G012
Transcript Identifier: ATR0737G012.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00068 : 1517314-1518415 : positive

Family Information

Homologous gene family: HOM04D000254
(847 genes in 55 species)
specific family
Orthologous gene family: ORTHO04D001310
(213 genes in 55 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00068.72
id	evm_27.TU.AmTr_v1.0_scaffold00068.72.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00068.72
name	evm_27.model.AmTr_v1.0_scaffold00068.72
pacid	31573358
tid	evm_27.model.AmTr_v1.0_scaffold00068.72.v1.0

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT3G13920

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G13920

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005774	IEA	PLAZA Integrative Orthology	vacuolar membrane	AT1G72730
GO:0009505	IEA	PLAZA Integrative Orthology	plant-type cell wall	AT1G72730
GO:0005730	IEA	PLAZA Integrative Orthology	nucleolus	AT3G13920
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT3G13920
GO:0048046	IEA	PLAZA Integrative Orthology	apoplast	AT3G13920
GO:0016020	IEA	PLAZA Integrative Orthology	membrane	AT3G13920
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT3G13920
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT3G13920

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated