Dicots PLAZA 4.5 gene overview : ATR0626G132

Gene: ATR0626G132 (Amborella trichopoda)

Overview

Gene Identifier: ATR0626G132
Transcript Identifier: ATR0626G132.1
Gene Type: Coding gene
Location: AmTr_v1.0_scaffold00025 : 4497787-4515932 : negative

Family Information

Homologous gene family: HOM04D004197
(83 genes in 54 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
geneName	EVM prediction AmTr_v1.0_scaffold00025.310
id	evm_27.TU.AmTr_v1.0_scaffold00025.310.v1.0
name	evm_27.TU.AmTr_v1.0_scaffold00025.310
name	evm_27.model.AmTr_v1.0_scaffold00025.310
pacid	31566521
tid	evm_27.model.AmTr_v1.0_scaffold00025.310.v1.0

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010584	IEA	PLAZA Integrative Orthology	pollen exine formation	AT5G58100

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT5G58100
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT5G58100

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated